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ABOUT THIS RECORD

ID: MNEST001317
species: Lactuca sativa
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGTTGCCCTG

miRNA*
GGACTACTTTCTATTGGCATA

mismatches: 5
bulges: 0

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pre-miRNA
GATCAATCATCAAGCGAAATCAGTTAAAGGACTACTTTCTATTGGCATATTTATTTAAAATATGTAATCCATGATTATTAGTCTTATTATGATATGCCAA
AGGAGAGTTGCCCTG
TAACTGTTTATTGCTTATATGTTAT


dot-bracket secondary structure
...........((((((...((((((.(((...(((((((.((((((((((....(((.((..((((((...))))))..)).)))....))))))))))
.)))))))...))).
))))))....)))))).........



SIMILARITIES
miRBase csi-MIR399d: 0.000000007

PMRD zma-miR399e: 0.0000004

microPC miR399: 4e-44
UniProt no hits

RFAM mir-399: 0.000008
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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