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ABOUT THIS RECORD

ID: MNEST001330
species: Lactuca sativa
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCTGTTCAATAAAGCTGTGG

miRNA*
ACAGCTTTCTTGAACTGCATG

mismatches: 2
bulges: 0

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pre-miRNA
GAATGGTGCTCTTTCTGTTCTTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGAAGATAG
AGAGAGGATCAAC


dot-bracket secondary structure
...((((.(((((((((((.((((((((((((.((((((.(((.(((((...............)))))..))).)))))).)))))))))))).)))))
)))))).))))..



SIMILARITIES
miRBase lja-MIR396: 0.000000006

PMRD lja-miR396: 0.000000006

microPC miR396: 2e-36
UniProt no hits

RFAM MIR396: 0.0000001
most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046137)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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