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ABOUT THIS RECORD

ID: MNEST001351
species: Lactuca virosa
miRNA family: miR171f
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATGTTGGAATGGCTCAATC

miRNA*
 TTGAGCCGTGCCAATATCATG

mismatches: 1
bulges: 0
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pre-miRNA
 TTGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAA
TATCATGAACTACTGTTAATTTGTA

dot-bracket secondary structure
........(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).))))
))))))..)))))))))........


SIMILARITIES
miRBase tcc-MIR171f: 0.0000000001

PMRD vvi-miR171i: 0.0000000004

microPC miR171: 4e-44		UniProt no hits

RFAM MIR171_1: 0.000000007		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045103)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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