miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
ABOUT THIS RECORD
ID:
MNEST001363
species:
Leymus cinereus x Leymus triticoides
miRNA family:
miR1044-3p
source:
miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides
Leymus
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTAGTGCATATTTGATTTT
miRNA*
AACCAAATATGCACCACATTG
mismatches:
2
bulges:
0
View larger
pre-miRNA
TAGAGCTGTTTATATACTACTTGTTACTCCCTCTGTTCCACA
ATGTAGTGCATATTTGATTTT
TAATAAGTCAAACAAGTCTACGTTTGAGCAAGATTGTA
GGGAAAATATCAACATCTAAAATCCAAAACTAGTATCATTAGATTCATCATGAAGTCTATTTTCATATTTTAAATATTTACTCCCTCTGTCTCATAATAT
AAGACGTTTTTAGTAGTATTTTAGATGCTGATAGTTTATTCTATAAACTTGGTCAAACGTAGACATGTTTGACTTTCTAAA
AACCAAATATGCACCACAT
TG
TGAAATGGAGGGAGTATGAAGTACCGAAACCTTTTCCT
dot-bracket secondary structure
)................(((((..(((((((((((((.((((
((((.(((((((((((.((((
((..((((((((((.((((((((((((.((((.(((((
((.(((.(((((.((((((((((...(((.(((..((((..........))))...))).))).(((((...)))))(((((.....(((((.((...))
.))))).....))))).)))))))))).))))).)))..))))))).)))).)))))))))))).))))))))))..))))
)).))))))))))).))))
))
)).)))))))))))))..)))))..((((...))))..
SIMILARITIES
miRBase
tae-MIR1130
:
7.0E-5
PMRD
tae-miR1130
:
7.0E-5
microPC
no hits
UniProt
no hits
RFAM
2MIR1122: 2.0E-8
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record