miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST001401
species:
Linum usitatissimum
miRNA family:
MIR838
source:
miRNEST
Taxonomy by NCBI:
Linum usitatissimum
Linum
Linaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTTCTTCTTGCTGC
miRNA*
GGCTAGGAACAAGGACGAAAAA
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCCTTTTTTCTCTTTTTCCTC
TTTTCTTCTTCTTCTTGCTGC
CCCTCCGGCAACTACAGTGGCGTCGTCGTTGCTCCTCCCCATTCTTTTCTCTTCTTTT
ACTTTCTTTGATTCTTCTTTTTTTTCTCTTTTCCCTCTCCTCATCTCCTCTCTATTCCCTCGCTTCTCACAGCGACGGCTACGGCGCCGTCCCCGCCTTC
ACTCTCTACTTCTTTCCTCACAGCGACAGCGGCGGAAAGCCGTCGCCTCCCTCACCGGCAACGAAAAAGAGGAAAAGAGGGAAGGGGAGACGGTGACCCC
ACCGCCGACGACGCGGCCATCGGCCGGAGAGGAGACAGACGGCGAGAGGAAGAGCAAGGGTAATGAAATTAGCCGCTGACTTGCTCGGGAAATTAA
GGCT
AGGAACAAGGACGAAAAA
ACGGAGCTCGACGAAGGT
dot-bracket secondary structure
.(((((.((((((.(((....
((((.(((((.((((((((..
...((((((((...(((((((....(((((((.(((......................
........((.(((((((((((.((.(((.((.(((((((...((((((((....((((((..(((((..((.((.(((.(((((....(((((((..((
........................))..)))).)))..))))).))))).))...((....)).....)))))...)))))))))))))).((((....)
)))(((((...........))))).))))))).)).))).)).))))))))))))))))))))))).....)))))))..)))).)))).......
))).
))))).))))).))))))
).))))...)).))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record