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ABOUT THIS RECORD
ID:
MNEST001423
species:
Lotus japonicus
miRNA family:
MIR171
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGCCGGATCAATATCACTC
miRNA*
GTGGTATTGCTTCTGCTCATC
mismatches:
4
bulges:
0
View larger
pre-miRNA
AAGTAGACAAGT
GTGGTATTGCTTCTGCTCATC
TTAATTATTGAATAAACTATATATATTATGGCTTAAGA
TGAGCCGGATCAATATCACTC
CCGTACAT
G
dot-bracket secondary structure
..(((.......
(((((((((.(((.(((((((
((((.((.((.(((.....))).)).))....))))))
))))).))).)))))))))..
...)))..
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
miR171
:
5e-40
UniProt
no hits
RFAM
MIR171_2: 0.0003
most similar mature miRNAs
Identical with:
miR171
from microPC (
MNEST045188
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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