miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST001427
species: Lotus japonicus
miRNA family: MIRf519
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTATAACATCATGAGCAATCA

miRNA*
ACTGCTCATGATGTTATATCA

mismatches: 3
bulges: 0

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pre-miRNA
ATCATGGCTGGCTTGCATACAATTTATTCAGGAATAATGAAGTATAACATCATGAGCAATCAGCCTTAATTTTTTTAGGCAGATGGACTGCTCATGATGT
TATATCA
TTTCCTTGAATTTACCTTCTGCACGCACAATATGCCAC


dot-bracket secondary structure
....((((..((.((((........(((((((...(((((..((((((((((((((((.((.((((.((....)).)))).....)).))))))))))))
)))))))
))..)))))))........)))).)).......)))).



SIMILARITIES
miRBase no hits

PMRD ath-miRf11142-akr: 0.00003

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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