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ABOUT THIS RECORD
ID:
MNEST001427
species:
Lotus japonicus
miRNA family:
MIRf519
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTATAACATCATGAGCAATCA
miRNA*
ACTGCTCATGATGTTATATCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATCATGGCTGGCTTGCATACAATTTATTCAGGAATAATGAA
GTATAACATCATGAGCAATCA
GCCTTAATTTTTTTAGGCAGATGG
ACTGCTCATGATGT
TATATCA
TTTCCTTGAATTTACCTTCTGCACGCACAATATGCCAC
dot-bracket secondary structure
....((((..((.((((........(((((((...(((((.
.((((((((((((((((.((.
((((.((....)).)))).....)
).))))))))))))
)))))))
))..)))))))........)))).)).......)))).
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf11142-akr
:
0.00003
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record