ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCA
dot-bracket secondary structure
.....((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCA
dot-bracket secondary structure
.....((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))....
SIMILARITIES| miRBase gma-MIR160: 3e-35 PMRD gma-miR160a: 3e-35 microPC miR160: 4e-28 | UniProt no hits RFAM mir-160: 2e-42 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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