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ABOUT THIS RECORD
ID:
MNEST001435
species:
Lotus japonicus
miRNA family:
miR168a
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT
miRNA*
TCGCTTGGTGCAGGTCGGGAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTCTCTCGCTTCGCGGTCTCTAAT
TCGCTTGGTGCAGGTCGGGAA
CCGCTGCTGCTTCTGCCGTTTTCGCGCGTAATCACTCACCGGAGGAGCGGTTACC
GCCGCCGGTTGGATCGGAT
CCCGCCTTGCATCAACTGAAT
CGGAACCCGCCTTGAAGCTTT
dot-bracket secondary structure
.......(((((((((..(((.((
(((.((((((((((.(((((.
(((......((...((((.....(((.((((((.(((.......))).)))))))
))...)))).))..))).)
)))).)))))))))).)))))
.)))..))))...)))))...
SIMILARITIES
miRBase
gma-MIR168
:
0.0000000000001
PMRD
gma-miR168
:
0.0000000000001
microPC
miR168
:
0.000002
UniProt
no hits
RFAM
MIR168: 0.00000000000004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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