ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIRf187
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAACCGCTGCGTCCAGCGAC miRNA* GCTGGATGCAGAGGTTTATC mismatches: 2 bulges: 0 |
pre-miRNA
AAAGAGAGAGAGAGAGGCGAGATGAGCGCTGGATGCAGAGGTTTATCGACCGATTCTTGTTTTGTGTTCTTCCACAGCCAAATTCAGGAAGAGATCGATG
AACCGCTGCGTCCAGCGACTTTGTCGCCTCTCTTAAATTAAAA
dot-bracket secondary structure
.........(((((((((((...(((((((((((((((.((((((((((....((((((.((((.(((.......)))))))..))))))....))))))
)))).)))))))))))).)))..))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAGAGAGAGAGAGAGGCGAGATGAGCGCTGGATGCAGAGGTTTATCGACCGATTCTTGTTTTGTGTTCTTCCACAGCCAAATTCAGGAAGAGATCGATG
AACCGCTGCGTCCAGCGACTTTGTCGCCTCTCTTAAATTAAAA
dot-bracket secondary structure
.........(((((((((((...(((((((((((((((.((((((((((....((((((.((((.(((.......)))))))..))))))....))))))
)))).)))))))))))).)))..))))))))))).........
SIMILARITIES| miRBase cpa-MIR162a: 3e-20 PMRD cpa-miR162a: 3e-20 microPC miR162: 3e-39 | UniProt no hits RFAM MIR162_2: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
