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ABOUT THIS RECORD

ID: MNEST001443
species: Lotus japonicus
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGCACTGCCTCTTCCCTGGC

miRNA*
AGGAAAGAGGCAGAGCATGG

mismatches: 2
bulges: 1

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pre-miRNA
AAGACAATGGCAGGAAAGAGGCAGAGCATGGATGGAGCTATCAACAAAATAAATTGAGAATGGGAGATGTTTGTTGTGGCTCTACTCATGCACTGCCTCT
TCCCTGGC
CACGTCTC


dot-bracket secondary structure
.((((..(((((((.(((((((((.((((((.((((((((.(((((((....(((..........))).))))))))))))))).)))))).))))))))
).))).))
)).)))).



SIMILARITIES
miRBase ptc-MIR408: 0.0000000004

PMRD ppe-miR408: 0.00000000000003

microPC miR408: 3e-51
UniProt no hits

RFAM MIR408: 8e-58
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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