ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAGGATGACTTGTCG miRNA* GCGAGGAATTCCGGCTCACT mismatches: 3 bulges: 1 |
pre-miRNA
AAGGGTGTGAGCTCAAATGTCTCGCATGAAGAGGTAGAGAGAGTACGGTTTGAGCCAAGGATGACTTGTCGGCCGACATCTTATCATATAGAATTAGAGG
GTGCTCTTGGCCGGCGAGGAATTCCGGCTCACTTTTGCTCTCTCTCTTCTCATATGAGATTCACAAAAGAGCTAGCTTCA
dot-bracket secondary structure
..((((...(((((....((((((.((((.((((.((((((((((.((..((((((..((((..((((((((((((((((((...............)))
)))...))))))))))))..)))).)))))).)).)))))))))))))))))).))))))........))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGGGTGTGAGCTCAAATGTCTCGCATGAAGAGGTAGAGAGAGTACGGTTTGAGCCAAGGATGACTTGTCGGCCGACATCTTATCATATAGAATTAGAGG
GTGCTCTTGGCCGGCGAGGAATTCCGGCTCACTTTTGCTCTCTCTCTTCTCATATGAGATTCACAAAAGAGCTAGCTTCA
dot-bracket secondary structure
..((((...(((((....((((((.((((.((((.((((((((((.((..((((((..((((..((((((((((((((((((...............)))
)))...))))))))))))..)))).)))))).)).)))))))))))))))))).))))))........))))).))))..
SIMILARITIES| miRBase gma-MIR169e: 0.0000000002 PMRD zma-miR169n: 0.000009 microPC miR169: 0.0006 | UniProt no hits RFAM MIR169_2: 8e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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