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ABOUT THIS RECORD
ID:
MNEST001449
species:
Lotus japonicus
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Lotus japonicus
Lotus
Loteae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTACTCCCTCCGTTCCAATTT
miRNA*
GTTGGAACTTGAGGAGGGTGTTC
mismatches:
4
bulges:
2
View larger
pre-miRNA
TAGAGCTTCGAA
GTTGGAACTTGAGGAGGGTGTTC
AGTGAATGTTGAACATTTTTCTACTGGCATATCATGTGTGGGAATATAAAACAATTTTGTAATAA
ACAGGAATCTACCCATGGGAATTTCTTTATTATGTCCGTGTTTTTGTTTTTTATATGTTGTTTCCAATCTATCTA
TTACTCCCTCCGTTCCAATTT
GTTT
GTTGT
dot-bracket secondary structure
...(((....((
((((((((..((((.(((((...
((.((.((..((..((.(((((((..((((...))))))))))).))..((((((..(((((.((
(((((((......((((((...............))))))))))))))).))))).)))))))))).))...)).
.))))))))).))))))))))
....
)))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record