ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACTCCCTCCGTTCCAATTT miRNA* GTTGGAACTTGAGGAGGGTGTTC mismatches: 4 bulges: 2 |
pre-miRNA
TAGAGCTTCGAAGTTGGAACTTGAGGAGGGTGTTCAGTGAATGTTGAACATTTTTCTACTGGCATATCATGTGTGGGAATATAAAACAATTTTGTAATAA
ACAGGAATCTACCCATGGGAATTTCTTTATTATGTCCGTGTTTTTGTTTTTTATATGTTGTTTCCAATCTATCTATTACTCCCTCCGTTCCAATTTGTTT
GTTGT
dot-bracket secondary structure
...(((....((((((((((..((((.(((((...((.((.((..((..((.(((((((..((((...))))))))))).))..((((((..(((((.((
(((((((......((((((...............))))))))))))))).))))).)))))))))).))...))..))))))))).))))))))))....
)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TAGAGCTTCGAAGTTGGAACTTGAGGAGGGTGTTCAGTGAATGTTGAACATTTTTCTACTGGCATATCATGTGTGGGAATATAAAACAATTTTGTAATAA
ACAGGAATCTACCCATGGGAATTTCTTTATTATGTCCGTGTTTTTGTTTTTTATATGTTGTTTCCAATCTATCTATTACTCCCTCCGTTCCAATTTGTTT
GTTGT
dot-bracket secondary structure
...(((....((((((((((..((((.(((((...((.((.((..((..((.(((((((..((((...))))))))))).))..((((((..(((((.((
(((((((......((((((...............))))))))))))))).))))).)))))))))).))...))..))))))))).))))))))))....
)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
