ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCCT miRNA* GAGAAGGCCAAGGAGAAGGAG mismatches: 5 bulges: 0 |
pre-miRNA
AACCAAAACATCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCGCAGGGAGCCTCATCGCACTGCTCCACAACTTCACATCTTCGCTCAATTCGATTG
TTCCTCAATTTCATTGGAAATATATCAACTTCAATTTTTCATTTGATGCCGATACAAGGTGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAG
AAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATC
CCAAAATCGAAGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGTTAAATGA
dot-bracket secondary structure
......(((.((((.(((((...(((.((((((((((((((....((.(((.........((((...((((((((((....((((((((......(((..
((((...........))))....))).((((((.(((((.(((.((((((.......))))..))......))).))))).)))))))))))))).....
.))))))))))(((((..(((...))).((..((((....((...)).)))).))....))))).((........))....))))..))).....((((.
.....))))..)).......))).))))))))))).)))...))))).)))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AACCAAAACATCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCGCAGGGAGCCTCATCGCACTGCTCCACAACTTCACATCTTCGCTCAATTCGATTG
TTCCTCAATTTCATTGGAAATATATCAACTTCAATTTTTCATTTGATGCCGATACAAGGTGCCTCCTAAACAATCAAAAGCTGAGGTAGCGAAGAAGCAG
AAGGTTGTGGAGGACAAAACCTTCGGTCTCAAGAACAAGAGCAAAGCGGTTCAGAAATATGTCCAGAATCTCAAGTCATCCGTGCAGCCCAAAACCGATC
CCAAAATCGAAGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGTTAAATGA
dot-bracket secondary structure
......(((.((((.(((((...(((.((((((((((((((....((.(((.........((((...((((((((((....((((((((......(((..
((((...........))))....))).((((((.(((((.(((.((((((.......))))..))......))).))))).)))))))))))))).....
.))))))))))(((((..(((...))).((..((((....((...)).)))).))....))))).((........))....))))..))).....((((.
.....))))..)).......))).))))))))))).)))...))))).)))))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SK74|C3H21_ARATH: 0.0004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
