miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST001595
species: Nicotiana benthamiana
miRNA family: MIRf439
source: miRNEST

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAAGCTGGTCCAGACACCA

miRNA*
GTGCGGGCAAGCTGGTATG

mismatches: 4
bulges: 2

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pre-miRNA
GAATTAGTCGAGGTGCGGGCAAGCTGGTATGTAGGGGTAAAGTCTGCGTATACACTATCCTTCCTAGACCCCACTTGTGGGATTACATTGGGTTTGTTGT
TGTTGCTGATGTTGTTGCGTGCAAGCTGGTCCAGACACCACCATTATCC


dot-bracket secondary structure
((.....))..((((.((((.((((.((((((((...(((.(((.(((...(((.((.(((.....((.((((....)))).)).....)))..)).)))
...))).))).))))))))))).)))).))))...))))..........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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