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ABOUT THIS RECORD
ID:
MNEST001602
species:
Nicotiana benthamiana
miRNA family:
miR166d
source:
miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGCTCGAGG
miRNA*
TCGGACCAGGCTTCATTCCCC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTTCTATTGTGG
GGAATGTTGTCTGGCTCGAGG
AATCTTTAATCTTGATCAAATTCTTTACACAGATCTATCTATTATTATATATGTTGCTTATACATTT
TAGATCTTATATAGATCTATAATTGTTAGTTGTTAGATCTATGAATTTTGATTATATTTTTTTGGGTCG
TCGGACCAGGCTTCATTCCCC
TCAAAGATT
dot-bracket secondary structure
..(((.(((.((
((((((..((((((.((((.(
(.((...((...((((((((....((.((.(((((((..................(((...(((...
(((((((.....)))))))....))).)))...))))))).)))).))))))))....))...)).)).
)))).))))))..))))))))
.))))))..
SIMILARITIES
miRBase
aqc-MIR166e
:
0.000000003
PMRD
aqc-miR166e
:
0.000000003
microPC
miR166
:
1e-85
UniProt
no hits
RFAM
mir-166: 0.0000008
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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