ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATGCCTTCCTTG miRNA* AAGATCTGCATCTCGCCTGAGC mismatches: 5 bulges: 1 |
pre-miRNA
GCGAAGATGAGCCGCTGCTGCTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGGCGACGGTGTCGCTGCTGTCGACCTCCAGCGTCA
CCGTCTTCCCGTGGAGGGTCTTCACGAAGATCTGCATCTCGCCTGAGCTCGGGGATTTCTCGCCGA
dot-bracket secondary structure
((((.((....((.(((..((((.((.(((((((..((.((((...((((((.(((..((((((((((((((((......)))))))....)))))))))
..))).(((...)))))))))..)))).))...))))))).)).)))).)))))..)).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCGAAGATGAGCCGCTGCTGCTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGGCGACGGTGTCGCTGCTGTCGACCTCCAGCGTCA
CCGTCTTCCCGTGGAGGGTCTTCACGAAGATCTGCATCTCGCCTGAGCTCGGGGATTTCTCGCCGA
dot-bracket secondary structure
((((.((....((.(((..((((.((.(((((((..((.((((...((((((.(((..((((((((((((((((......)))))))....)))))))))
..))).(((...)))))))))..)))).))...))))))).)).)))).)))))..)).))))...
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.0000005 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 6e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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