ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTCCCTCTGTCCCAAATT miRNA* TCTGGGCTGGAGGCAGTATCT mismatches: 3 bulges: 0 |
pre-miRNA
GTCAACTGCAAGTACTCCCTCTGTCCCAAATTATTAGTCGTTTTGATTTTTCTATGTGCATAGTTTTAGTTATGTATCTATATACGTGATATCTAGATGC
ATAGCAAATCTTTATAACTAGAAAAGTCAAAACGACTAACAATCTGTAAATCTGGGCTGGAGGCAGTATCTTTCATTGA
dot-bracket secondary structure
.((((.((.(((((((.((((((.((((.(((..((((((((((((((((((((.((..((((..((.((((((((((((.(((.....))).)))))))
))))).))...)))).))))))))))))))))))))))(((...))).))).)))).)))))).)))).))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCAACTGCAAGTACTCCCTCTGTCCCAAATTATTAGTCGTTTTGATTTTTCTATGTGCATAGTTTTAGTTATGTATCTATATACGTGATATCTAGATGC
ATAGCAAATCTTTATAACTAGAAAAGTCAAAACGACTAACAATCTGTAAATCTGGGCTGGAGGCAGTATCTTTCATTGA
dot-bracket secondary structure
.((((.((.(((((((.((((((.((((.(((..((((((((((((((((((((.((..((((..((.((((((((((((.(((.....))).)))))))
))))).))...)))).))))))))))))))))))))))(((...))).))).)))).)))))).)))).))).))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.0000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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