ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: miR160g
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCAAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
AGCTCGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCGTGGCGCGATTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCAGAAC
A
dot-bracket secondary structure
......(((((((.(((((((.((((((((((...((((((((((..(((...))).))))..)))))).)))))))))).))))))).)))))))....
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTCGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCGTGGCGCGATTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCAGAAC
A
dot-bracket secondary structure
......(((((((.(((((((.((((((((((...((((((((((..(((...))).))))..)))))).)))))))))).))))))).)))))))....
.
SIMILARITIES| miRBase zma-MIR160b: 3e-41 PMRD zma-miR160b: 3e-41 microPC miR160: 2e-24 | UniProt no hits RFAM mir-160: 2e-36 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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