ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCAAAAAAC miRNA* TTTTTAGGACGGAGGGAGTACA mismatches: 1 bulges: 1 |
pre-miRNA
CCAAAAAGCACTACTCCCTCCGTCCAAAAAACAGTCATCTTAAAAATTCTAGTATAGATTAACAAAAAGATAAAATGACCATGTCTGCCCATACTTGTTA
TCTATATTTGGCACTAATTGATTTTTGCATGCACATGTTCTTTCTAAATAGGGTAAGATGATTTTTAGGGCAAAATTTGAATCCTAAAATGACTTATTTT
TTTAGGACGGAGGGAGTACAATTTTGCG
dot-bracket secondary structure
.......(((.((((((((((((((((((((.((((((.(((...((((..((((((((.(((((..(((((.........)))))........))))))
)))))))((.((.((((..((((...((((....))))((((.((......)).)))).)))).)))).))..))...))))..))).))))))...)))
))).))))))))))))))......))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCAAAAAGCACTACTCCCTCCGTCCAAAAAACAGTCATCTTAAAAATTCTAGTATAGATTAACAAAAAGATAAAATGACCATGTCTGCCCATACTTGTTA
TCTATATTTGGCACTAATTGATTTTTGCATGCACATGTTCTTTCTAAATAGGGTAAGATGATTTTTAGGGCAAAATTTGAATCCTAAAATGACTTATTTT
TTTAGGACGGAGGGAGTACAATTTTGCG
dot-bracket secondary structure
.......(((.((((((((((((((((((((.((((((.(((...((((..((((((((.(((((..(((((.........)))))........))))))
)))))))((.((.((((..((((...((((....))))((((.((......)).)))).)))).)))).))..))...))))..))).))))))...)))
))).))))))))))))))......))).
SIMILARITIES| miRBase no hits PMRD osa-miRf10422-akr: 0.0007 microPC no hits | UniProt no hits RFAM MIR1122: 0.0008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
