ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGTGCAGCGTTGATGA miRNA* ACCGGCGCTGCACTCAATAA mismatches: 1 bulges: 0 |
pre-miRNA
AAGAGAAAGGGGCGCGAAGGCATCATTGAGTGCAGCGTTGATGAGCCGCCGGCGGCGAGGTCCGCCGGCCGCGGCTCACCGGCGCTGCACTCAATAACGC
CTTTGCTCTCTCTGGCCG
dot-bracket secondary structure
........((((.((((((((...((((((((((((((((.((((((((.(((((((.....)))).))))))))))).))))))))))))))))...))
)))))).)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAGAAAGGGGCGCGAAGGCATCATTGAGTGCAGCGTTGATGAGCCGCCGGCGGCGAGGTCCGCCGGCCGCGGCTCACCGGCGCTGCACTCAATAACGC
CTTTGCTCTCTCTGGCCG
dot-bracket secondary structure
........((((.((((((((...((((((((((((((((.((((((((.(((((((.....)))).))))))))))).))))))))))))))))...))
)))))).)))).......
SIMILARITIES| miRBase bdi-MIR397b: 0.0000000004 PMRD bdi-miR397: 0.0000000004 microPC miR397: 0.00002 | UniProt no hits RFAM MIR397: 0.000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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