miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST001817
species: Panicum virgatum
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCTTA

miRNA*
GGCGGTCACCTTGGCTAGT

mismatches: 0
bulges: 2

View larger
pre-miRNA
TAGGACGAAGGAAGAAGAGGGGTCTTCCATGAGGGCCATAGCCAGCCTTTGGTAGCCAAGGATGACTTGCTTACATGGCCTTGTGAGTCCCGGTTGCATA
GCCGGTTCAGCTAGGTCTGTGGGCGGTCACCTTGGCTAGTCTGAGTGGCTTTTGCCTCTCATGGGAGGCTTCTTCTTCTCTGTTAGTCA


dot-bracket secondary structure
...(((..((((((((((..((((((((((((((((...(((((..(((.(((((((((((.(((((.(((((((.(((((.(((((..((((((....)
))))))))).).)))))))))))))))))))))))))).)).))))))))...))).))))))))))))))))))))).))....))).



SIMILARITIES
miRBase sbi-MIR169c: 9e-34

PMRD sbi-miR169c: 9e-34

microPC no hits
UniProt no hits

RFAM MIR169_5: 2e-32
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;