ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR1171
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGAGTGGAGTGGAGTGGAGT miRNA* TCCACTGCTTCACTTGCCC mismatches: 2 bulges: 2 |
pre-miRNA
TGCTCCACTGCTTCACTTGCCCCAGAACGTGCGACCACGGGAAGACTGAGAGAACACGGCTGCTTAAGCAAACGGACGGTTCTGATTCTAGTAGCGCGAA
GTGTATCAGCTTCAGCTTCACTTGGAGTGTAGCATCGCTGCCTGGGTAGCCGCCCAAGCAGATGCCGCGAGAAGAGCGGGGACTTGCCGACGGAGTGGAG
TGGAGTGGAGTGGCGTGGCG
dot-bracket secondary structure
.(((((((((((((((((.((((....((((....)))).((((.((((....((((.((((((..((.((.((((....)))).)))))))))).....
)))).)))))))).((((...((....(((.(((((...((.(((((....))))).)).))))).))).)).))))))))...........))))))))
)..)))))))).((...)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCTCCACTGCTTCACTTGCCCCAGAACGTGCGACCACGGGAAGACTGAGAGAACACGGCTGCTTAAGCAAACGGACGGTTCTGATTCTAGTAGCGCGAA
GTGTATCAGCTTCAGCTTCACTTGGAGTGTAGCATCGCTGCCTGGGTAGCCGCCCAAGCAGATGCCGCGAGAAGAGCGGGGACTTGCCGACGGAGTGGAG
TGGAGTGGAGTGGCGTGGCG
dot-bracket secondary structure
.(((((((((((((((((.((((....((((....)))).((((.((((....((((.((((((..((.((.((((....)))).)))))))))).....
)))).)))))))).((((...((....(((.(((((...((.(((((....))))).)).))))).))).)).))))))))...........))))))))
)..)))))))).((...)).
SIMILARITIES| miRBase cre-MIR1171: 0.00001 PMRD cre-miR1171: 0.00001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
