ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf88
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCGGTCGGTAACACCAACC miRNA* TTGGTGTTTTGACCCGGTACT mismatches: 1 bulges: 2 |
pre-miRNA
CATAGAATATAACATTTGTCAGATTTAGTACCGGTCGGTAACACCAACCAATACTAAATGTCACATTTTAGCGTCGGTTGGTGTTTTGACCCGGTACTCA
ATAGTCTTCACGGGTTACTTCAA
dot-bracket secondary structure
....(((..((((...(((.(((((.(((((((((((..((((((((((.((.(((((........))))).)).)))))))))).))).))))))))..
..)))))..))).)))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATAGAATATAACATTTGTCAGATTTAGTACCGGTCGGTAACACCAACCAATACTAAATGTCACATTTTAGCGTCGGTTGGTGTTTTGACCCGGTACTCA
ATAGTCTTCACGGGTTACTTCAA
dot-bracket secondary structure
....(((..((((...(((.(((((.(((((((((((..((((((((((.((.(((((........))))).)).)))))))))).))).))))))))..
..)))))..))).)))).)))..
SIMILARITIES| miRBase no hits PMRD osa-miRf11904-akr: 0.000006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
