ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTCTCTATCTGTCAGT mismatches: 0 bulges: 1 |
pre-miRNA
GGGAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCT
ATCTGTCAGTCACTCATTAGGCCCATCACT
dot-bracket secondary structure
((...((..((((((((((....(((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).)))))))))))))
.))))))))....)))..))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGGAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCT
ATCTGTCAGTCACTCATTAGGCCCATCACT
dot-bracket secondary structure
((...((..((((((((((....(((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).)))))))))))))
.))))))))....)))..))))))))).))
SIMILARITIES| miRBase ssp-MIR156: 3e-51 PMRD zma-miR156b: 2e-43 microPC miR156: 3e-42 | UniProt no hits RFAM mir-156: 2e-37 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045630) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
