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ABOUT THIS RECORD

ID: MNEST001826
species: Panicum virgatum
miRNA family: MIRf1229
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAGAGTGAGCACACATGGTG

miRNA*
CTGTGCGTGCTCACTCTCTAT

mismatches: 2
bulges: 0

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pre-miRNA
GGGAGGAGCTGGGTTTTGAAGGTTTGACAGAAGAGAGTGAGCACACATGGTGGTTTCTTAGCATGAGTGCCATGCTGGGAGCTGTGCGTGCTCACTCTCT
AT
CTGTCAGTCACTCATTAGGCCCATCACT


dot-bracket secondary structure
((...((..((((((((((....(((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).)))))))))))))
.)
)))))))....)))..))))))))).))



SIMILARITIES
miRBase ssp-MIR156: 3e-51

PMRD zma-miR156b: 2e-43

microPC miR156: 3e-42
UniProt no hits

RFAM mir-156: 2e-37
most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045630)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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