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ABOUT THIS RECORD
ID:
MNEST001828
species:
Panicum virgatum
miRNA family:
MIR156
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA
miRNA*
TGCTTACTCCTCTTTCTGTCAGC
mismatches:
2
bulges:
2
View larger
pre-miRNA
TCTTGGGAGAT
TGACAGAAGAGAGTGAGCACA
CGGCGTGATGAACAGCATAACATGTATGTTGTTCTCACCGCG
TGCTTACTCCTCTTTCTGTCAGC
CTC
TCTTT
dot-bracket secondary structure
....(((((.(
(((((((((.((((((((((.
(((..(((.((((((((((.....)))))))))))))))).)
)))))))))...)))))))))).
)))
))...
SIMILARITIES
miRBase
zma-MIR156d
:
1e-22
PMRD
zma-miR156d
:
1e-22
microPC
miR156
:
1e-18
UniProt
no hits
RFAM
mir-156: 7e-21
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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