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ABOUT THIS RECORD

ID: MNEST001830
species: Panicum virgatum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTACTCCCTCCGTTCCAAATT

miRNA*
 TTTTAAACGGAGGGAGTAGTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TACAAAATATACTACTCCCTCCGTTCCAAATTATAAGACATCCTAAAAATCTTGAAGAGTCAAAACAATCTCAAGTTTGACCAAGATTATAGAGATAAAT
ATAAAAATTTATGATATCAAATTGATGTATTATGAAAATATAACTAATAAAAAATCTAATAGTACTTAGTTTATATAATAAATGTTATTATTCTATTATA
TAAATTTGATCAAACATAAAAAACTTTGACTCTACAAGATTGTTGGAATGTCTAATAATTTTAAACGGAGGGAGTAGTCGGTAGTGT

dot-bracket secondary structure
.(((...((((((((((((((((((..(((((((.((((((.((((.(((((((.(((((((((..........((((((.((((.(((((.(((.....
((((..((((((.((((.(((((((.(((((((.........................)))))))))))))))))).)))))).))))...)))....))
))).)))).)))))).........))))))))).))))))).)))).)))))).)))))))..)))))))))))))))..))).)))


SIMILARITIES
miRBase no hits

PMRD osa-miRf11780-akr: 0.001

microPC miR1439: 0.0002		UniProt no hits

RFAM MIR1122: 0.00000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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