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ABOUT THIS RECORD
ID:
MNEST001879
species:
Parthenium argentatum
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Parthenium argentatum
Parthenium
Heliantheae
Heliantheae alliance
Asteroideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACGGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGAAG
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATAATGGTGCTCTTTCTATTC
TTCCACGGCTTTCTTGAACTG
CATGGGTTTTGATCTGTCAGATCTGTGTTTTTTTATATAATCTTTGCG
GTTCAATAAA
GCTGTGGGAAG
ATAGAGACAGTATCAAAA
dot-bracket secondary structure
....(((((((.((((((((.
((((((((((((.((((((((
((.(((((..(((((...)))))...............))))).))))
)))))).)))
))))))))).)
))))))).)))))))...
SIMILARITIES
miRBase
ath-MIR396a
:
0.0000000001
PMRD
ath-miRf11010-akr
:
0.000000000007
microPC
miR396
:
5e-25
UniProt
no hits
RFAM
MIR396: 0.0000000005
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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