ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAGGGCTTCTCA miRNA* AGAAGCCTTTGAAGGAGAATA mismatches: 3 bulges: 0 |
pre-miRNA
TTTCCAAGGCATTGATTGTTTGCTCTCCCTCAAGGGCTTCTCACTTTGACCTACAATGACCATAACTCTAATCTGTATGTTTTGAGTCATGTTAGAAGCC
TTTGAAGGAGAATAAAAAATCCATGTTTTGATT
dot-bracket secondary structure
....((((((((.((((.((((.(((((.((((((((((((.((..((((...(((....((((...........))))..))).)))).)).)))))))
))))).))))).)))).)))).))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCCAAGGCATTGATTGTTTGCTCTCCCTCAAGGGCTTCTCACTTTGACCTACAATGACCATAACTCTAATCTGTATGTTTTGAGTCATGTTAGAAGCC
TTTGAAGGAGAATAAAAAATCCATGTTTTGATT
dot-bracket secondary structure
....((((((((.((((.((((.(((((.((((((((((((.((..((((...(((....((((...........))))..))).)))).)).)))))))
))))).))))).)))).)))).))))))))...
SIMILARITIES| miRBase aqc-MIR477f: 0.000006 PMRD aqc-miR477f: 0.000006 microPC no hits | UniProt no hits RFAM MIR473: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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