ABOUT THIS RECORDspecies: Phaseolus acutifolius
miRNA family: MIRf179
source: miRNEST
Taxonomy by NCBI:
Phaseolus acutifolius Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTTGGCCTGAACGACGGCCA miRNA* ACCGTCGTATATGCCGACGAA mismatches: 4 bulges: 0 |
pre-miRNA
CAAACGTATCTGGAGGCGTCAGGCCCTCCGTGACCGTCGTATATGCCGACGAAGGTACCGAGAGGACCGGACTCGATCTGGCTCTGGTCTTCGAGAACCT
GGTTGGCCTGAACGACGGCCATGGAGAAATCACCGGATGCATATTTTCCG
dot-bracket secondary structure
.....((((((((.(((.....)))(((((((.(((((((.((.((((((..((((.....((((((((((.((.....)).))))))))))....))))
.)))))).)).))))))).)))))))......))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAACGTATCTGGAGGCGTCAGGCCCTCCGTGACCGTCGTATATGCCGACGAAGGTACCGAGAGGACCGGACTCGATCTGGCTCTGGTCTTCGAGAACCT
GGTTGGCCTGAACGACGGCCATGGAGAAATCACCGGATGCATATTTTCCG
dot-bracket secondary structure
.....((((((((.(((.....)))(((((((.(((((((.((.((((((..((((.....((((((((((.((.....)).))))))))))....))))
.)))))).)).))))))).)))))))......))))))))..........
SIMILARITIES| miRBase no hits PMRD ath-miRf10245-akr: 0.0005 microPC no hits | UniProt sp|Q0V7V2|P2C42_ARATH: 2e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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