ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGCATAGAGAGCAC miRNA* GCTCTCTATCTTCTGTCATC mismatches: 1 bulges: 1 |
pre-miRNA
CAAGGGGAAGGCTTGATGTGATGACAGAAGCATAGAGAGCACGTACGCCTCAAACGCAGAGTCCCGGCATGTGAGCGCATCTGCTCTCTATCTTCTGTCA
TCGACATCAACATCTCATTT
dot-bracket secondary structure
....((((....((((((((((((((((((.((((((((((.((.(((.(((...((.........))...)))))).)).)))))))))))))))))))
)).)))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CAAGGGGAAGGCTTGATGTGATGACAGAAGCATAGAGAGCACGTACGCCTCAAACGCAGAGTCCCGGCATGTGAGCGCATCTGCTCTCTATCTTCTGTCA
TCGACATCAACATCTCATTT
dot-bracket secondary structure
....((((....((((((((((((((((((.((((((((((.((.(((.(((...((.........))...)))))).)).)))))))))))))))))))
)).)))))))..))))....
SIMILARITIES| miRBase pta-MIR156a: 5e-25 PMRD pta-miR156a: 5e-25 microPC miR157: 1e-22 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
