miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST001996
species: Picea sitchensis
miRNA family: miR482d
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCTTGCGAGGATAGGAAAAA

miRNA*
TTTCCCACTCCTCCCAAGCCCA

mismatches: 3
bulges: 1

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pre-miRNA
CGCAAGGGGAGAAAGGCCAAAGGCTTGCGAGGATAGGAAAAACTCGTGTGGTGTATTTTCTCACTCACCGATCTACAGTTTTTCCCACTCCTCCCAAGCC
CA
TGGCCTTGCCTTCCCTGT


dot-bracket secondary structure
....(((((((.(((((((..((((((.(((((..(((((((((.((((((((............)))))...))))))))))))...))))).))))))
..
)))))))..)))))))..



SIMILARITIES
miRBase pab-MIR482d: 4e-50

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pab-MIR482d from miRBase (MNEST039386)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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