ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGAATGACTTGCCCG miRNA* GGTAGGTTATTCTTGGCAAAG mismatches: 2 bulges: 0 |
pre-miRNA
TTATGAAGAAATTCGTGTAGGCTCTCGCATGTCGAGGCAGATAGCCATACTCAGCCAAGAATGACTTGCCCGCATACTGTTATGAATCATTGTTCCACAT
GCGCATTTCAGTCCTGCGGGTAGGTTATTCTTGGCAAAGCATCGCTATCTCCTTTTTCATGCCAGGCCCTGCGCGAGGATGGTGTGT
dot-bracket secondary structure
.((((......((((((((((.(((.(((((..((((.(((((((.((.((..(((((((((((((((((((((.((((..(((......(((...))).
...)))..))))..)))))))))))))))))))))..)).)).)))))))))))...))))).))).)))))))))).....)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATGAAGAAATTCGTGTAGGCTCTCGCATGTCGAGGCAGATAGCCATACTCAGCCAAGAATGACTTGCCCGCATACTGTTATGAATCATTGTTCCACAT
GCGCATTTCAGTCCTGCGGGTAGGTTATTCTTGGCAAAGCATCGCTATCTCCTTTTTCATGCCAGGCCCTGCGCGAGGATGGTGTGT
dot-bracket secondary structure
.((((......((((((((((.(((.(((((..((((.(((((((.((.((..(((((((((((((((((((((.((((..(((......(((...))).
...)))..))))..)))))))))))))))))))))..)).)).)))))))))))...))))).))).)))))))))).....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC miR169: 7e-16 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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