ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGCCAAGGATGACTTGCCT miRNA* GTAAGTTGTCCTCGGCTAAAT mismatches: 2 bulges: 0 |
pre-miRNA
GTTCATCTGTGCGCTTGCATGTAGAGGCAGAACTATTTATTCAGCCAAGGATGACTTGCCTACACCTTGTTATAGGTATCTGCTAGTTATGCCGATATTG
ATTTCAGGTACCGGGTAAGTTGTCCTCGGCTAAATATTTGTCTCTGTATCTTATGCCAGACCTCAGATGAGG
dot-bracket secondary structure
.((((((((....((.(((((.(((.(((((..((..((((.((((.((((((((((((((..((((.(..((.((((((.((.......)).)))))).
))..)))))...)))))))))))))).)))).))))..))..))))).)))))))).))....)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTCATCTGTGCGCTTGCATGTAGAGGCAGAACTATTTATTCAGCCAAGGATGACTTGCCTACACCTTGTTATAGGTATCTGCTAGTTATGCCGATATTG
ATTTCAGGTACCGGGTAAGTTGTCCTCGGCTAAATATTTGTCTCTGTATCTTATGCCAGACCTCAGATGAGG
dot-bracket secondary structure
.((((((((....((.(((((.(((.(((((..((..((((.((((.((((((((((((((..((((.(..((.((((((.((.......)).)))))).
))..)))))...)))))))))))))).)))).))))..))..))))).)))))))).))....)))))))).
SIMILARITIES| miRBase sbi-MIR169c: 0.000009 PMRD sbi-miR169c: 0.000009 microPC miR169: 4e-45 | UniProt no hits RFAM MIR169_5: 0.0002 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045441) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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