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ABOUT THIS RECORD
ID:
MNEST002000
species:
Picea sitchensis
miRNA family:
miR950-5p
source:
miRNEST
Taxonomy by NCBI:
Picea sitchensis
Picea
Pinaceae
Coniferales
Coniferopsida
Coniferophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCACATCTGGGCCACGATGGTT
miRNA*
CCATGGTGCCCCAGATGAGAAG
mismatches:
3
bulges:
0
View larger
pre-miRNA
AAGAGGTTTTGGAGGTGATCT
TCACATCTGGGCCACGATGGTT
TATTTTTCTTCGTTTATTTATCATAAA
CCATGGTGCCCCAGATGAGAAG
AGCACCTT
CGCCTCCGTT
dot-bracket secondary structure
..(((((...(((((((.(((
((.((((((((.(((.((((((
(((...................)))))
)))).))).)))))))).))))
).))))))
))))))....
SIMILARITIES
miRBase
pab-MIR950
:
6e-58
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
pab-MIR950
from miRBase (
MNEST039389
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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