ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTATTCCTCCCATT miRNA* TGGGAGGATAGGAGAAGGCT mismatches: 1 bulges: 2 |
pre-miRNA
GCACGAGGTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCCCTATTCCTCCCATTCCTATTGCCTCC
ATCACACA
dot-bracket secondary structure
....(((((..((((.((((((((((((.((((((((.(((.(((((.....)))))....))).)))))))))))).)))))))).))))...))))).
........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCACGAGGTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCCCTATTCCTCCCATTCCTATTGCCTCC
ATCACACA
dot-bracket secondary structure
....(((((..((((.((((((((((((.((((((((.(((.(((((.....)))))....))).)))))))))))).)))))))).))))...))))).
........
SIMILARITIES| miRBase pab-MIR482b: 6e-52 PMRD pta-miR482c: 0.0000003 microPC miR482: 0.0003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
