ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTATTCCTCCCATT miRNA* TGGGAGGGTAGGAGAAGGCT mismatches: 0 bulges: 2 |
pre-miRNA
AAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCATCAGTCTTCCCTATTCCTCCCATTCCTATTGCCT
dot-bracket secondary structure
........(((((((((((((((((.(((((((.((..((((........))))...))..))))))))))).))))))))))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCATCAGTCTTCCCTATTCCTCCCATTCCTATTGCCT
dot-bracket secondary structure
........(((((((((((((((((.(((((((.((..((((........))))...))..))))))))))).))))))))))))).......
SIMILARITIES| miRBase pta-MIR482c: 2e-33 PMRD pta-miR482c: 2e-33 microPC miR482: 0.00007 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
