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ABOUT THIS RECORD

ID: MNEST002025
species: Pinus contorta
miRNA family: MIR1311
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGGGCTGGCATAACTCCGCCC

mismatches: 4
bulges: 1

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pre-miRNA
CGCCTCTGCTTATTGGCTTGGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTC
CTACTGTGCCTTTTAAGTAATTT


dot-bracket secondary structure
......((((((..(((.(((((((((..((((((((((((.(((((...((((.(((.......))).))))...))))).)))))).))))))..)))
)))))).)))...))))))....



SIMILARITIES
miRBase pta-MIR1311: 2e-43

PMRD pta-miR1311: 2e-43

microPC miR1311: 1e-31
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-MIR1311 from miRBase (MNEST039446)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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