ABOUT THIS RECORDspecies: Pinus contorta
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAACTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CTCATGACGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGA
AAACTGTGGGAAAGCATGGTAGGATTCTGCAATA
dot-bracket secondary structure
....((..((((((((((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..))))))))))))
)).))))))))))).))))))))))))..))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCATGACGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGA
AAACTGTGGGAAAGCATGGTAGGATTCTGCAATA
dot-bracket secondary structure
....((..((((((((((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..))))))))))))
)).))))))))))).))))))))))))..))...
SIMILARITIES| miRBase pta-MIR396: 3e-63 PMRD pta-miR396: 3e-63 microPC miR396: 4e-44 | UniProt no hits RFAM MIR396: 5e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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