ABOUT THIS RECORDspecies: Pinus contorta
miRNA family: MIR1083
source: miRNEST
Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCTGGAACGAAGCACGCT miRNA* CGTGTTTCGGTTCAGGCTCATG mismatches: 1 bulges: 1 |
pre-miRNA
CGTGTGGCGCCTGGAAATTCATAGCCTGGAACGAAGCACGCTATCTTTGAATTCCATACTTTGTTAATAACCTTTCTCGCTTTCGATCTGCTGGTGGATC
TTCATCTGTTTTGCACTTGTATTATTGTCCATGGGGAAAAGACAGCGTGTTTCGGTTCAGGCTCATGAATCTCTAACTGTCAATC
dot-bracket secondary structure
....(((((..((((.((((((((((((((.(((((((((((.(((((...((((((((.....(((((.........((....(((((......)))))
.......))..........)))))..))..)))))).))))).))))))))))).)))))))).)))))).))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGTGTGGCGCCTGGAAATTCATAGCCTGGAACGAAGCACGCTATCTTTGAATTCCATACTTTGTTAATAACCTTTCTCGCTTTCGATCTGCTGGTGGATC
TTCATCTGTTTTGCACTTGTATTATTGTCCATGGGGAAAAGACAGCGTGTTTCGGTTCAGGCTCATGAATCTCTAACTGTCAATC
dot-bracket secondary structure
....(((((..((((.((((((((((((((.(((((((((((.(((((...((((((((.....(((((.........((....(((((......)))))
.......))..........)))))..))..)))))).))))).))))))))))).)))))))).)))))).))))..)))))...
SIMILARITIES| miRBase smo-MIR1083: 0.00004 PMRD smo-miR1083: 0.00004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
