ABOUT THIS RECORDspecies: Pinus pinaster
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGTAAGACT mismatches: 2 bulges: 2 |
pre-miRNA
GGTTGCGAGAAAGGGAGGTGGTATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAACACA
dot-bracket secondary structure
.((((((.((((((((((((....(((..((((....((((.((((.(((((((((.((((((.((((.(((((((...)))))))............))
)).))))))))))).)))).)))).))))....))))))).))))))))))))...))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGTTGCGAGAAAGGGAGGTGGTATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAACACA
dot-bracket secondary structure
.((((((.((((((((((((....(((..((((....((((.((((.(((((((((.((((((.((((.(((((((...)))))))............))
)).))))))))))).)))).)))).))))....))))))).))))))))))))...))))))...
SIMILARITIES| miRBase pta-MIR482b: 6e-47 PMRD pta-miR482b: 6e-47 microPC miR482: 1e-44 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-miR482b from PMRD (MNEST051568) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
