ABOUT THIS RECORDspecies: Pinus pinaster
miRNA family: miR1863
source: miRNEST
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTCTGATACCATGTTGAAG miRNA* TCAACTTTGTCAAAGCCCT mismatches: 4 bulges: 2 |
pre-miRNA
TATACTGATCCTTCAACTTTGTCAAAGCCCTTCAACTTGCTTTGCTGCCTTTGTTGCAGTTGATCCTTGAATGTCTCTTTTTGTTGCCCTTCCTTTGACA
TCAACACCTTAGCTCTGATACCATGTTGAAGAATCTAAGG
dot-bracket secondary structure
......(((.(((((((..(((((.(((...((((((.((...((.......)).))))))))...((((.((((.....................))))
)))).......))).)))))....))))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TATACTGATCCTTCAACTTTGTCAAAGCCCTTCAACTTGCTTTGCTGCCTTTGTTGCAGTTGATCCTTGAATGTCTCTTTTTGTTGCCCTTCCTTTGACA
TCAACACCTTAGCTCTGATACCATGTTGAAGAATCTAAGG
dot-bracket secondary structure
......(((.(((((((..(((((.(((...((((((.((...((.......)).))))))))...((((.((((.....................))))
)))).......))).)))))....))))))).))).....
SIMILARITIES| miRBase osa-MIR1873: 0.0004 PMRD osa-miR1873: 0.0004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
