ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIRf837
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGGCATTGACTGGTGATGA miRNA* ATCACTCACGTCCTTGCATTCTT mismatches: 4 bulges: 2 |
pre-miRNA
ACCCAGCATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCT
dot-bracket secondary structure
...(((((..((((.(((..(((.(((((((((......)))))))))...)))..))).)))).)))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCCAGCATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCT
dot-bracket secondary structure
...(((((..((((.(((..(((.(((((((((......)))))))))...)))..))).)))).)))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P49730|RIR2_TOBAC: 0.0001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
