ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* ACTGCAGCCTGGCACGAGA mismatches: 4 bulges: 0 |
pre-miRNA
TCGGATCAACGAGCAGAAGACATGGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAG
TCACGCATGGTGTCGGACCAGGCTTCATTCCCCTCACAACACTCTTCCAATTTCTAACGTTGATGCCAAAA
dot-bracket secondary structure
..(((((((((...(((((...(((.(((((.(..(((((((((.((.(((((((..(((.(((.........(((((....((......))...)))))
........))).)))..))))))).)).)))))))))..)))))).))).)))))..))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGGATCAACGAGCAGAAGACATGGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAG
TCACGCATGGTGTCGGACCAGGCTTCATTCCCCTCACAACACTCTTCCAATTTCTAACGTTGATGCCAAAA
dot-bracket secondary structure
..(((((((((...(((((...(((.(((((.(..(((((((((.((.(((((((..(((.(((.........(((((....((......))...)))))
........))).)))..))))))).)).)))))))))..)))))).))).)))))..))))))).))....
SIMILARITIES| miRBase pta-MIR166b: 1e-66 PMRD pta-miR166b: 1e-66 microPC miR166: 0.000009 | UniProt no hits RFAM mir-166: 0.000003 | most similar mature miRNAs |
Identical with: pta-MIR166b from miRBase (MNEST039421) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
