miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002052
species: Pinus taeda
miRNA family: MIR1314
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGCCTCGAATGTTAGGAGA

miRNA*
TTCAACATTAGAGGCCAATA

mismatches: 2
bulges: 1

View larger
pre-miRNA
GCCCATTCCAAACGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTT
AGGAGA
ATGTTTTCCTCTACCTAAGCATGCTATCTCAATGGAATT


dot-bracket secondary structure
....((((((...((((.((((((((.(((..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).))))))
.)))))
)).)))))..))).)))).)))).))))....)))))).



SIMILARITIES
miRBase pta-MIR1314: 4e-60

PMRD pta-miR1314: 4e-60

microPC miR1314: 1e-32
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR1314 from microPC (MNEST045564)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;