ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR319
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCC miRNA* AGCTCCCTTCAATCCAAGA mismatches: 1 bulges: 0 |
pre-miRNA
AGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTT
GTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCCAA
dot-bracket secondary structure
..((((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((....(((.(((((((..(((((((((....)))))))
))...((((.......))))...))))))).)))....)))))))....))))..))))...))))).))).)).))..))))).)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTT
GTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCCAA
dot-bracket secondary structure
..((((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((....(((.(((((((..(((((((((....)))))))
))...((((.......))))...))))))).)))....)))))))....))))..))))...))))).))).)).))..))))).)))))))))))))).
SIMILARITIES| miRBase pta-MIR319: 2e-111 PMRD pta-miR319: 2e-111 microPC miR319: 2e-108 | UniProt no hits RFAM MIR159: 0.00001 | most similar mature miRNAs |
Identical with: pta-miR159a from PMRD (MNEST051553) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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