ABOUT THIS RECORDspecies: Populus deltoides
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCTGGCTGGCTCGAAG mismatches: 2 bulges: 2 |
pre-miRNA
AAAGGTGTGTGGGTGTGTTGAGGGGAATGCTGGCTGGCTCGAAGCTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCTTCGGACCAGGCTTC
ATTCCCCTCAAACATACAAGNTTATTT
dot-bracket secondary structure
.((..((((((......((((((((((((..((((((.(((((((((.((((....((.((.......)).))...)))).))))))))).))).))).)
))))))))))).))))))...))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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AAAGGTGTGTGGGTGTGTTGAGGGGAATGCTGGCTGGCTCGAAGCTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCTTCGGACCAGGCTTC
ATTCCCCTCAAACATACAAGNTTATTT
dot-bracket secondary structure
.((..((((((......((((((((((((..((((((.(((((((((.((((....((.((.......)).))...)))).))))))))).))).))).)
))))))))))).))))))...))....
SIMILARITIES| miRBase ptc-MIR166f: 4e-50 PMRD ptc-miR166f: 4e-50 microPC miR166: 1e-44 | UniProt no hits RFAM mir-166: 3e-33 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045050) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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