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ABOUT THIS RECORD

ID: MNEST002108
species: Populus deltoides
miRNA family: MIR1448
source: miRNEST

Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTTCCAACGCCTCCCATAC

miRNA*
ATGGGAGGATTGGACAGTG

mismatches: 2
bulges: 1

View larger
pre-miRNA
GGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGTGCTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAA
CGCCTCCCATAC
CGGTGATCTCCAGCTTTTTCCTCCCTTTCCCTTGCTTGTC


dot-bracket secondary structure
.(((((..(((((((((...(((((..((((((.(((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))
..))))))))))
).))))).))))))....)))))))))))))))))))...



SIMILARITIES
miRBase ptc-MIR1448: 1e-38

PMRD ptc-miR1448: 1e-38

microPC miR1448: 2e-34
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR1448 from microPC (MNEST046739)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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